ACER Nitro new SSD cloned from HDD not automatically booting

[Varkaas]

I recently purchased an 'Acer Aspire V Nitro VN7-591G-792U' I also purchased a 'Crucial MX200 M.2 Type 2280SS (Single Sided) 250GB SATA 6Gbps (SATA III) Micron 16nm MLC NAND Internal Solid State Drive (SSD) CT250MX200SSD4'
I installed the SSD and proceeded to clone the Win 10 install from the HDD to the SSD, all went according to plan. So, after booting off the SSD install I proceeded to format the HDD. However, after restarting the system it automatically started system repair tools, I assumed it was because it was still attempting to boot off of the HDD. So I enter BIOS and change the boot order placing the SSD above the HDD, the system still continues to attempt to boot off the HDD. I can manually boot from the SSD using f12 and it's still working fine, it's just annoying that I have to do it after every restart. Any ideas why it's doing this?
(I have the latest BIOS available for this device)
This might help.

 

[hang-the-9]

What happens if you remove the secondary disk? Does it work OK then? You said you formatted the drive after you did the clone< but it shows a recovery partition and a reserved partition, which shows you did not format the drive. Or did you only format the single partition?