Be aware that a USB 3.0 burner will perform like a USB 2.0 one if it's plugged in to a USB 2.0 port . It'll need to be plugged in to a USB 3.0 port to get full performance potential from it (an important point, especially where disc-burning is concerned).
And, no, you won't need to buy two burners -- it's perfectly possible to boot from/install OS from either a USB 2.0 or a USB 3.0 CD/DVD drive - - either will do it.
In any case, you can install Windows from a USB pen drive these days (Windows 7 or later), so you don't need to use an optical drive at all for that task any more.
May I ask why you need an external one? Is it for the convenience of being able to use it on different computers?