Clear cases, or more accurately, Acrylic computer cases, are heat traps. Much better to get a good sturdy steal case with a side acrylic panel and some good lighting. Your choices are MATX (small) Mid Tower (normal sized), or Full Tower (large to HUGE).
Companies that have the best rep for cases are, Coolermaster, Fractal, Thermaltake, Corsair, Antec, Rosewill and NZXT. There are some other very good cases from other companies but what you will get from those are industry standard.
So choose a price range and a company and we can give you some good advice. Some other helpful information would be:
Do you plan to have more than one GPU?
What size mother board do you want?
Do you plan on liquid cooling or air cooling?
The only cases I can think of with handles off the top of my head are:
http://www.newegg.com/Product/Product.aspx?Item=N82E16811146065
http://www.newegg.com/Product/Product.aspx?Item=N82E16811139015