basically it's normal for a download from Mega
Cut and paste from Superuser to save me from typing a whole pile of stuff
https://superuser.com/questions/1190803/website-wants-to-store-files-on-this-device-chrome
The message you are seeing pertains to FileSystem API. As websites are becoming web apps, it is becoming necessary for them to act like actual apps. One such behavior is storing large data and settings files on your computer and access them freely, reading, writing and changing them as opposed to a simple one-off download for you. That's why FileSystem API is invented.
In case of Mega.co.nz, it downloads an encrypted copy of file to the local storage, decrypts it and then lets you have the decrypted file in your Downloads...