Intel with Nvidia is a complete illusion. What they may be talking about is your North Bridge. You may notice a slight difference in performance using an Nvidia North bridge over an ATI or Intel north bridge if you have an Nvidia card, same If you have an ATI north bridge running ATI graphics cards. I always match North Bridge chips to GPU's, the CPU won't matter since you won't be putting a AMD chip in an Intel Motherboard, it just won't work.
Of course I don't really know if it matters since generally speaking most PCIx16 slots are cross compatible with Nvidia or ATI GPU's.