Flux is corrosive, it's also electrically conductive. And that goopy stain is right up on a capacitor. So unless you are sure it's just Flux, which I'm not, and can guarantee that there's non stuck up under that cap, cleaning it is a risk I'd not take.
It could also be that that cap does have Flux stuck under it and what you are seeing is leakage from the cap, which may not clean up easily with isopropyl, and would still be damaged cap which will fail rather quickly.
Without any sort of guarantee that any cleaning or tampering will result in zero damage or zero possible failure or zero issues, it's best left as is and returned. OP paid for a brand new, undamaged, unblemished mobo, that's what he should expect.