yc1793 :
Good morning,
I'm planning to build a computer for data analysis for a research lab. Primary analysis programs include ArcGIS, MATLAB, and SAS. It will also be used for development in LabView. Plus some web browsing, iTunes, Microsoft Office, etc. No gaming at all.
My total budget is $2000, although I'd prefer to stay under $1600 if possible. I've put together a configuration at pcpartpicker:
http://pcpartpicker.com/p/zB9LRB
To summarize here:
Intel Core i7-4790 3.6GHz Quad-Core Processor
Gigabyte GA-Z97X-UD3H-BK ATX LGA1150 Motherboard
Kingston HyperX Beast 32GB (4 x 8GB) DDR3-1866 Memory
Samsung 850 Pro Series 256GB 2.5" Solid State Drive
Western Digital BLACK SERIES 4TB 3.5" 7200RPM Internal Hard Drive x2
PNY Quadro K2000D 2GB Video Card
Fractal Design Define R4 (Black Pearl) ATX Mid Tower Case
Corsair RM 550W 80+ Gold Certified Fully-Modular ATX Power Supply
Asus BW-12B1ST/BLK/G/AS Blu-Ray/DVD/CD Writer
The SSD will be used for the OS (Windows 7 Pro), and the two HDD's will be set up in Raid 1 for data.
Any input or advice would be greatly appreciated. Thank you in advance.
yc1793,
In consideration of the use which is highly calculation intensive, uses custom algorithms that may be highly multi-threaded, and the probabillity of very long calculation periodicity under which large data sets have to be given proper sequence, structure, and retention, the proposed system requires a substantial good core count, a reasonable clock speed, wide memory bandwidth, and high double precision. The configuration is affected by dataset size and filters- ARCGIS, calgorithms and processes / sequences, MATLAB. IIn combination, the system needs to be very stable and reliable with a lot of memory, and a fast disk system - server-like robustness and precision.
This is not a system for which to use LGA1150 which is limited to 4-core CPU's, 16PCIe lanes which limited peripherals, and a maximum of 32GB of RAM. Instead, and LGA2011-3 > ECC RAM > Quadro / Firepro GPU is indicated. A quite compentent, reliable system is possible near the budget:
If the preference is for new components:
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1. CPU: Intel Xeon E5-1650 v3 Six-Core Processor 3.5 / 3.8GHz 0GT/s 15MB LGA 2011-v3 CPU> $565 (Passmark CPU score = 13440)
http://ark.intel.com/products/82765/Intel-Xeon-Processor-E5-1650-v3-15M-Cache-3_50-GHz
http://www.superbiiz.com/detail.php?name=E51650V3BX
2. Cooling: Cooler Master Hyper 212 EVO CPU cooler > $31.
3. Motherboard: ASRock X99 EXTREME4 LGA2011-v3/ Intel X99/ DDR4/ Quad CrossFireX & Quad SLI/ SATA3&USB3.0/ M.2/ A&GbE/ ATX Motherboard > $194
http://www.superbiiz.com/detail.php?name=MB-X99EXM4
4. Memory: 16GB (2X 8GB) Samsung DDR4-2133 8GB/1Gx72 ECC/REG CL15 Server Memory > $200 ($100 each)
http://www.superbiiz.com/detail.php?name=D4218G4S1
5. GPU: PNY NVIDIA Quadro K1200 4GB GDDR5 4 Mini DisplayPorts Low Profile PCI-Express Video Card > $302
http://www.superbiiz.com/detail.php?name=PNY-1200DP
6. GPU coprocessor: Tesla M2090 6GB> Used $125
http://www.nvidia.com/docs/IO/43395/tesla-m2090-board-specifications.pdf
http://www.nvidia.com/object/tesla-servers.html
https://en.wikipedia.org/wiki/Nvidia_Tesla
http://www.techpowerup.com/145914/new-nvidia-tesla-gpu-smashes-world-record-in-scientific-computation.html
http://www.ebay.com/itm/NVIDIA-Tesla-M2090-6GB-GDDR5-PCIe-x16-GPU-Computing-Processor-Video-Card-/231656449337?hash=item35efcce539
7. Drive 1: SAMSUNG 850 EVO MZ-75E250B/AM 2.5" 250GB SATA III 3-D Vertical Internal Solid State Drive (SSD) > $100 (OS, applications, working files)
http://www.newegg.com/Product/Product.aspx?Item=N82E16820147372&cm_re=Samsung_850_EVO-_-20-147-372-_-Product
8. Drives 2,3: 2X WD BLACK SERIES WD2003FZEX 2TB 7200 RPM 64MB Cache SATA 6.0Gb/s 3.5" Internal Hard Drive> $234 ($118 ea (Files, Backup, System Image)
http://www.newegg.com/Product/Product.aspx?Item=9SIA6AH20Y2869&cm_re=Wd_Black-_-22-236-624-_-Product
9. Power Supply: SeaSonic S12G S12G-650 650W ATX12V / EPS12V 80 PLUS GOLD Certified Active PFC Power Supply > $90
http://www.superbiiz.com/detail.php?name=PS-S12G650
10. Optical Drive: Samsung SH-224DB/BEBE 24X SATA DVD±RW Internal Drive w/o Software (Black) SH-224DB $17.99
11. Case: Cooler Master Silencio 652S - Silent Mid Tower Computer Case with Sound Dampening Panels, Three Silencio FP 120 Fans, and Multiple Removable Air Filters > $120
http://www.newegg.com/Product/Product.aspx?Item=N82E16811119303&ignorebbr=1
12. OS: Microsoft Windows 7 Professional 64-bit w/ SP1 (1-Pack, DVD), OEM MSFQC04649 > $138.99
________________________________________________________
TOTAL = $ 2,000
This system is based on the CPU that I believe to have the best cost /performance ratio of any current Xeon- the E5-1650 v3 and which provides 40 PCIe lanes to accommodate a used Tesla M2090 co-processor that adds 6GB of 384-bit and 512 additional CUDA cores and a high level of double precision. These are good value: used $125, new, $2,600 and these were made precisely for these uses- custom algorithmic processing. The motherboard is X99 chipset which extracts a high CPU performance.
The component balance can be change of course and instead of the Tesla M2090, put that cost into the 2X WD 4TB drives. The onboard RAID could be used initially and that could fund 32GB RAM or have a used Quadro K2200 instead of K1200. There are a lot of possible variants.
What this system doesn't have is 32or 64GB RAM, 2X
4TB HD's and a good hardware RAID controller, which I feel is very important, but the performance in the intended applications should be quite good and in the range of the optimal system for the budget.
The next step is a dual CPU system based on a proper workstation motherboard and this is an earlier concept to demonstrate the size of the jump in cost to make this worthwhile:
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1.8.15
CPU: (2) Intel Xeon Processor E5-2637 v3 :15M Cache, 3.5/3.7 GHz, 4-core @ 3.4 / 3.7 Ghz, 20MB, 135W > $2,000 ($1,000 ea)
http://ark.intel.com/products/83358
http://www.superbiiz.com/query.php?s=E5-2637+v3+
OR> Probably better for this use:
2X E5-2640 v3 (8-core @ 2.6 / 3.4, DDR4-1866) > $1,900 ($950 each)
http://ark.intel.com/products/83359
CPU Cooler: (2) Cooler Master Seidon 120XL RL-S12X-24PK-R1 120mm CPU Liquid Cooling System > $160 ($79 ea.)
http://www.superbiiz.com/detail.php?name=FAN-RLS12X
Motherboard: Supermicro X10DAi > $400
http://www.supermicro.com/products/motherboard/Xeon/C600/X10DAi.cfm
http://www.newegg.com/Product/Product.aspx?Item=N82E16813182938&cm_re=Supermicro_X10DAi-_-13-182-938-_-Product
Memory: 32GB (4x 8GB) Samsung DDR4-2133 8GB/1Gx72 ECC/REG CL15 Server Memory > $456 ($114ea.)
http://www.superbiiz.com/detail.php?name=D4218G4S1
GPU: PNY NVIDIA Quadro K2200 4GB GDDR5 DVI/2DisplayPorts PCI-Express Video Card > $459.
http://www.superbiiz.com/detail.php?name=PNY-K2200
GPU Coprocessor: Tesla M2090 6GB > Used $125
RAID Controller : LSI MegaRAID SAS 9341-4i (LSI00419) PCI-Express 3.0 x8 Low Profile SATA / SAS High Performance Four-Port 12Gb/s RAID Controller (Single Pack)--Avago Technologies > $175
Disk 1: SAMSUNG 850 PRO MZ-7KE512BW 2.5" 512GB SATA III Internal Solid State Drive (SSD) > $292.
http://www.newegg.com/Product/Product.aspx?Item=N82E16820147361&cm_re=samsung_850_512gb-_-20-147-361-_-Product
Disks 2, 3, and 4: Seagate Constellation ES.2 ST33000650SS 3TB 7200 RPM 64MB Cache SAS 6Gb/s 3.5" Enterprise Internal Hard Drive Bare Drive> $810 ($270 ea.)
http://www.newegg.com/Product/Product.aspx?Item=N82E16822178296
Optical Disk: LG Black 16x Blu-Ray BDXL SATA Internal rewriter with 3D Playback, Model BH16NS40 > $100
http://www.newegg.com/Product/Product.aspx?Item=N82E16827136264
Power Supply: SeaSonic X Series X-850 (SS-850KM3 Active PFC F3) 850W ATX12V v2.3 / EPS 12V v2.91 SLI Ready CrossFire Ready 80 PLUS GOLD Certified Full Modular Active PFC Power Supply> $150.
http://www.newegg.com/Product/Product.aspx?Item=N82E16817151102
Case: LIAN LI PC-A75 Black Aluminum ATX Full Tower Computer Case > $181
http://www.superbiiz.com/query.php?s=LIAN+LI+PC-A75+
Fan Controller: NZXT Sentry-2 5.25" Touch Screen Fan Controller > $23.
http://www.newegg.com/Product/Product.aspx?Item=N82E16811992005&cm_re=fan_controller-_-11-992-005-_-Product
Operating System: Microsoft Windows 7 Professional SP1 64-bit English (1-Pack), OEM > $139.
http://www.superbiiz.com/detail.php?name=MSFQC08289
_______________________________________
TOTAL = $5300-5400
Another way to accomplish a specification with a lot of CPU threads and RAM but at lower cost than above is to use depreciated but still very capable CPU's. Here is a system based on the excellent Xeon LGA1366 5600-series 6-cores. This uses a new Supermico Superworkstation which is assembled and configured such that only the CPU, RAM, GPIU, and drives need be plugged, saving a lot of decisions and assembly. Here's an earlier idea for this approach:
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1. Supermicro SuperWorkstation SYS-7036A-T Dual LGA1366 Xeon Mid-Tower Workstation Barebone System (Black) > $658 (Includes case, motherboard, power supply, heatsink, fans)
http://www.superbiiz.com/detail.php?name=SY-736AT
2. CPU: 2X Xeon X5690 (6-core @ 3.47 / 3.73GHz) > about $500 ($250 each)
3. Memory: 48GB (6X 8GB) DDR3 1333 ECC Registered > about $200
4. GPU: PNY NVIDIA Quadro K2200 4GB GDDR5 PCIe Graphics Card ) > Used about $350
5. RAID Controller : LSI MegaRAID SAS 9341-4i (LSI00419) PCI-Express 3.0 x8 Low Profile SATA / SAS High Performance Four-Port 12Gb/s RAID Controller (Single Pack)--Avago Technologies > $175
6. Disk 1: SAMSUNG 850 EVO 250GB 2.5" 512GB SATA III Internal Solid State Drive (SSD) > $100.
http://www.newegg.com/Product/Product.aspx?Item=N82E16820147361&cm_re=samsung_850_512gb-_-20-147-361-_-Product
7. Drive 2, 3: Western Digital Black 2 TB SATA III 7200 RPM 64 MB Cache Bulk/OEM Desktop Hard Drive, Black, WD2003FZEX> $246 ($123 each (Files, Backup, System Image)
8. Optical Disk: SAMSUNG DVD Burner 24X DVD+R 8X DVD+RW 8X DVD+R DL 24X DVD-R 6X DVD-RW 16X DVD-ROM 48X CD-R 24X CD-RW 48X CD-ROM SATA Model SH-224DB/BEBE - OEM > $18
TOTAL = $2,247 This could be done with a single CPU and 24GB RAM for about $1900 or so. Later, add, the 2nd CPU, more RAM- it can use up to 96GB- and a Tesla co-processor.
There is a middle ground which I feel would have the best cost / performance and future expandability of all, which is to buy a used "barebones" or low specification high quality workstation system:
1. The Dell Precision T7500 is dual CPU capable can use up to 192GB of DDR3-1333, 2X 200W GPU, having plenty of PCIe lanes and 1100W server-grade PSU. The distinct advantage of this generation is that it can take advantage of completely depreciated CPU's like the excellent Xeon X5690 6-core @ 3.47 / 3.73GHz- which are now $250 instead of the original $1,650. The T7500 has a, and etc. A complete, working, low specification system can cost less than $300. I've had very good results with a T5500 purchased for $171 and spending about $800 in upgrades- see the 2. System listed at the end of the post.
2. Dell Precision T3610 can use Xeon E5 v2 up to 18-core, up to 64GB DDR3 1866 ECC RAM and equip it with a 6 or 8-core core Xeon E5-1600 series CPU- a second to added later, 32GB - to become 64 later, a used Quadro K2200, and Tesla M2090.
3. Dell Precision T5610> For example:
DELL PRECISION T5610 Barebone Workstation ! Build your own System !! > $295
http://www.ebay.com/itm/DELL-PRECISION-T5610-Barebone-Workstation-Build-your-own-System-/321680862904?hash=item4ae5ac6eb8
[Dual E5-2600, 128GB 1866 ECC RAM , 685W or 825W PSU]
2X E5-2630 (6-core @ 2.6 /3.1GHz) about $1,100 (12-cores /24Threads]
64GB DDR3-1866ECC (about $500)
Quadro K2200 (4GB) (Used about $350)
LSI 9260-4i RAID controller (Used about $160)
Samsung 850 EVO 250GB > $100
2X WD Black 4TB > $400
________________________________
Total = about $2810
But this could be done with a single CPU, 32GB RAM for about $2050.
If these alternatives are interesting, we can discuss them. On balance the new E5-1650 v3 system is probably the best idea and secondly, an all-out Precision T7500 with dual Xeon X5690's (6-core @ 3.47 / 3.73GHz, Passmark = 14358), Quadro K1200, Tesla M2090, 6GB/s RAID controller and etc.
Sorry for such a very long post. An interesting project and challenge. I'm very curious about ArcGIS. Can you say something about the kind of projects you're doing?
Cheers,
BambiBoom
1. HP z420 (2015) > Xeon E5-1660 v2 six-core @ 3.7 / 4.0GHz > 32GB DDR3 ECC 1866 RAM > Quadro K4200 (4GB) > Intel 730 480GB (9SSDSC2BP480G4R5) > Western Digital Black WD1003FZEX 1TB> M-Audio 192 sound card > 600W PSU> Logitech z2300 > Linksys AE3000 USB WiFi > 2X Dell Ultrasharp U2715H (2560 X 1440) > Windows 7 Professional 64 >
[ Passmark Rating = 5064 > CPU= 13989 / 2D= 819 / 3D= 4596 / Mem= 2772 / Disk= 4555] [Cinebench R15 > CPU = 1014 OpenGL= 126.59 FPS] 7.8.15
Pending upgrade: HP /LSI 9212-4i PCIe SAS /SATA HBA RAID controller, 2X Seagate Constellation ES.3 1TB (RAID 1)
2. Dell Precision T5500 (2011) > Xeon X5680 six -core @ 3.33 / 3.6GHz, 24GB DDR3 ECC 1333 > Quadro K2200 (4GB ) > Samsung 840 250GB / WD RE4 Enterprise 1TB > M-Audio 192 sound card > Linksys WMP600N PCI WiFi > 875W PSU > Windows 7 Professional 64> HP 2711x (1920 X 1080)
[ Passmark system rating = 3490 / CPU = 9178 / 2D= 685 / 3D= 3566 / Mem= 1865 / Disk= 2122] [Cinebench 15 > CPU = 772 OpenGL= 99.72 FPS] 7.8.15