I transfered my computer into a new case and I am 100% sure everything is connected. I went into the bios and all USB ports are enabled. I purchased this computer from best buy and upgraded it after that. I just haven't upgraded the motherboard or CPU because I thought it was unnecessary. My motherboard is a intel M3970BM here is a website describing it in full detail. Thanks for the support!
http://www.ascendtech.us/hp-pavilion-h8-685006-001-motherboard_i_mbhp685006001am.aspx
http://www.ascendtech.us/hp-pavilion-h8-685006-001-motherboard_i_mbhp685006001am.aspx