I'm sorta confused here, your motherboard does feature those headers, JFP2 is just above (to the right of in the picture) the JFP1 header. JSP1 is at the upper left on the picture just below the JAUD1 header. JTPM1 is just below that. You can also find their location in your manual. Or is it that you have empty headers and seemingly no use for them and are looking to plug them into something?
Can't say what's going on with your case though.