Synphul, hwc1954 is right, you are misreading the manual. The comment, "The 12V SATA power cable can not be used to power the PWM hub if connecting to these types of 4-pin connectors," is not referring to a CPU 4 pin connector, or any other true PWM 4 pin connector. It is referring to the type of 4 pin connector in the preceding paragraph in the manual, that describes a type of 4 pin connector that while it has 4 pins, works like a 3 pin connector and relies on voltage to adjust speed, rather than a PWM signal. When hooking up to one of these non-pwm type 4 pin connectors, you will override the voltage control feature if you hook up the sata connector as well. BUT with a PWM 4 pin connector this is not the case. You are supposed to hook up the sata connector with the PWM type 4 pin connector. This will ensure there is sufficient power for all the fans, but the voltage will still be regulated by the hub interpreting the PWM signal and using that to control voltage to the 3 pin connectors in the hub.
I recently built a computer using this case and hub. All my case fans (6 of them) are controlled via the hub. The hub is plugged into the CPU connector on the mobo (asus p6x58d premium). And the hub is also connected to one of my sata power cables. I use the asus ai suite fan control program to control the speed of the cpu fan connector which controls all my case fans through the phanteks hub. My h80i is plugged into an uncontrolled 3 pin connector thereby supplying a full 12v to the h80i and leaving the real cpu fan speeds to the built in h80i fan control.
I did not experience the inability to slow the fans down that hwc1954 is describing. In fairness I did not measure minimum voltage, or actual fan rpms, I simply relied on the sound of the fans (since that is the thing I want most to control, to keep the computer quiet unless it is running hard and getting hot). But using the hub I was able to reduce the speed of the case fans so that they are virtually inaudible when set to minimum. And they still hit full speed when needed. For all intents and purposes, when plugged into the hub they appear to behave exactly as they do when plugged into a controlled 3 pin connector on the mobo, slow to the point of being almost silent when the computer is idling or running cool, and full speed when the computer is under a significant load or running hot. The asus fan control program gives me several preset profiles as well as a fully customizable profile. And it certainly seems to be able to fully control the 3 pin fans connected to the hub. They will not drop down to the point where they stall, but they do get very, very slow. So, assuming that the hub really can't drop the voltage as low as a 3 pin connector could, it still gives a pretty wide range of speed control, at least in my setup.