darkspartenwarrior :
Is it better to use the Marvell controlled addon SATAIII(individual JBOD)
That depends on what you mean by "Marvell controlled addon SATAIII" If you mean the ones on your motherboard, Then yes that would be better but, If you mean on an add-on-card then that would depend on the card.
The reasons I use Raid 0 on the Intel Sata II ports on my motherboard instead of one good Sata III SSD the Marvell Sata III ports are two-fold.
#1 at the time of this (My) build there were no Sata III SSD's with good write speeds.
#2 With the exception of the Rampage III Extreme Black Edition and the GIGABYTE G1.Assassin that both came out at a later date, all x58 (LGA 1366) motherboards used the Marvell 88SE9128 SATA III Controller which was (IMO) pure trash. It uses only one PCIe lane shared with both Sata III ports theoretically giving the combined Sata III ports a total possible throughput of 5G. While this by itself doesn't sound too bad if you only were to hook up one SSD, the reality was much worse.
This crappy Marvell 88SE9128 SATA III Controller was also used in many (if not most) LGA 1155 motherboards but, as far as I know All x79 (lga 2011) use a much better Marvell SATA III Controller that uses two PCIe lanes. While I wasn't able to find any info on what Sata III controller your motherboard uses, it's clear from reviews like this one:
http://www.bit-tech.net/hardware/motherboards/2012/01/06/intel-dx79si-review/7 that states:
At stock speeds, the DX79SI proved just as capable as the other LGA2011 boards we've tested. Its score of 1,735 in the image editing test was top of the class, as was its SATA 6Gbps read speed of 553MB/sec. It also managed a SATA 6Gbps write speed of 521MB/sec, essentially maxing out our OCZ Vertex 3 SSD.
that your motherboard uses a much better SATA III controller.
So one Sata III SSD on your motherboards Sata III ports would be about the same as 2-SSD's in raid 0 on the Sata II ports and if you can get the same speed without using raid that is always the better option.
If you're talking about a Marvell SATA III Add-on-card, all the ones that are PCIe x1 only use 1 PCIe lane and they suck. You would need one that uses at least 2 lanes like one of these:
http://www.newegg.com/Product/Productcompare.aspx?Submit=ENE&N=100007531&IsNodeId=1&page=5&bop=And&ActiveSearchResult=True&CompareItemList=73|16-115-114^16-115-114-TS%2C16-115-118^16-115-118-TS%2C16-115-077^16-115-077-TS%2C16-115-130^16-115-130-TS Right now I'm also trying to find out how good these are for my own use. The reviews are very mixed, however it is my feeling that they should be OK for one good Sata III SSD.