Not sure what the shape of the holes has to do with any abnormal noises, even though the shape does affect noise LEVELS, but my system is nearly silent except when it's under a very high load and even then it's still pretty quiet.
Make sure you have the fan oriented correctly so that it is exhausting out the back of the case and not bringing air into the case to clash with the airflow coming off the CPU cooler. Every fan in my case is an NF-A14 PWM Chromax.black.swap except the rear exhaust which is actually an even higher end NF-A14 PWM iPPC industrial 2000rpm.
Setting your fan curve correctly in the BIOS, AND making sure that the fan header is set to PWM and not Auto or DC control, can have an affect as well. Sounds to me as though you are experiencing the fan running at full speed all the time OR you have the source for that fan header set to "CPU" rather than being set to "System" or "PCH" in the fan settings of the BIOS.
Other than that, no idea what you mean. I don't hear any such noises from this, or any of the many other builds I've installed these and other fans in. When it comes to fans, Be Quiet doesn't even come close to touching Noctua as far as noise levels and performance. They are only able to achieve their low advertised noise levels by limiting the RPM of their fans to a very low RPM on most all of their fan models. Noctua and Thermalright on the other hand, invest superior engineering and thousands of hours of testing to develop fans which are able to provide low noise levels AND high CFM and static pressure operation, without having to limit the RPM to a degree that affects overall performance in order to do so.