If you have a SATA based SSD (SATA 3.0), then it should be utilized via a SATA 3.0 port.
Your SSD doesn't have a SATA Express connector - which consists of 2x SATA 3.0 ports + 1 additional, as per this pic:
The 2 SATA 3.0 ports that 'make up' the SATA Express can still be used for regular SATA 3.0 devices (although, obviously, you can't use those ports for SATA 3.0 AND try to connect a SATA Express device)