My take, if I were building in that case:
1) Use an H80i connected to the rear 120mm fan spot to cool your CPU. Seems others have had great success with this cooler in this case, and I know from experience its a good cooler and will keep clutter out of the middle of your case as opposed to a giant air cooler.
Now, that being said, I always replace the stock fans on these liquid coolers to quiet them down. I like Cougar (CF-V12H) fans as they have solid static pressure for pushing air through radiators and believe me, they do just about as good of a job as the stock (higher RPM) fans and MUCH quieter. If you want to add a little light to the inside of your case you can use the LED variant as well. I use these on H105s regularly. If you're paranoid about not having equivalent air flow to the stock fans, the Corsair SP120 HPs are at least quieter than the stock fans and don't have the same whine but are pretty much a 1-for-1 replacement to the stock fans.
2) If you want a nice static pressure fan replacement for the front, again, those same Cougar fans. Same for the side fan. I'd probably leave the top 140mm that comes with the case to see how it is. Most 140mm fans are pretty quiet so you may not need to replace it, unless you don't like the blue LED.
I've used the Corsair SP120s (regular and HPs) and the Noctuas. Both have lower static pressure, more noise (all be it minimal) and are more expensive than the Cougars. I now swear by Cougar fans again, after stopping for a while, and put them in all the workstations I build.