howard.howardmalc.malc :
I wanted to transfer my OS from my Hard Drive to my Solid State, but apparently, everything was copied. How should I go about fixing it so only my OS and a few games are on the SSD? Do I just delete everything in it and then transfer the files from the Hard Drive, or is there a better way?
Assuming you did this correctly, this is exactly what a clone does. Indeed, that is the meaning of the word 'clone'...an exact duplicate.
You can't clone 'only the OS' to a new drive. All or nothing. You can't pick and choose.
Does the system work perfectly from only the new SSD?
Test this to be 100% sure.
If it does, then you wipe the entire HDD. All partitions on it, leaving one blank space.
Then, you can move some things (not programs) to that old HDD.