I view flickers as being one of two ways: 1)A drop in voltage/current due to a suddenly applied load. 2) An increase in voltage/current due to some added source of electricity - i.e., a lightning strike.
Direct hits can destroy circuits and devices. More distant strikes can cause all sorts of current flows through any conductive paths available. Saw a strike come in via a telephone line once, threw a spark over a king size bed and across the room. Blackened the telephone jack.
As for EMI filters they are mostly to screen out unwanted frequencies that can can/could interfere with devices on the circuit. Probably more useful for high end audio devices etc. For the most part I am skeptical of the effectiveness of most such things - more marketing hype than substance. Especially for the lower end surge protectors sold by big box stores.
Some folks just tie a simple, loose overhand knot in power cables. Others purchase iron rings, baluns, etc, to clamp on the power cables.
As I understand it, the most effective way is to have a completely separate ciruit set up and wired/protected to be "clean" at the start of the circuit. Usually such circuits are designated with orange outlets in commericial settings. They can be installed in private residences as well provided they meet the codes. Becoming more popular because so many people have had devices destroyed due to power line and power circuit problems.
Black & Decker publish an excellent book - The Complete Guide to Home Wiring. You can also download the NEC Code Book for more information.
Black Box also has a very comprehensive set of tutorials via the Resources tab on their home page (www.blackbox.com). Also just reading some of the online user manuals can be very informative and helpful.