Any of these boards have a BIOS flashback feature so you can update BIOS even without a processor. But I suspect you may have another Ryzen processor to do updates since you have two B450 boards now and selling one on. So out-of-box ready for your 5800X3d shouldn't be a concern.
Whichever board you get you'll want to update to the latest BIOS anyhow, for a variety of compatibility/stability/performance reasons. It's a good idea to do that before installing the OS, so doing it with flashback is the best way to get the board fully up to date before moving forward.
The Tomahawk boards have overkill VRMs but they're all more than capable of comfortably driving a 5800X3d so you can't really go wrong. The Max WiFi obviously has the WiFi in addition to 2.5Gb LAN you're paying for if you don't need it. Or if you do need it...well it's the only choice left. Tomahawk has a GB and 2.5Gb LAN along with ALC1200 audio, Gaming plus has 2.5Gb LAN only and ALC892 audio. They all have a header for front panel USB-C port. One thing I'd look at are back panel USB ports to see which is more suitable for your needs (assuming there's any difference). Another thing to consider is pure aesthetics, if that's important, so consider how each would look in your build.
Essentially, they're all very capable boards and you can't go wrong in pure performance and stability terms. The choice comes down to personal considerations. The choice is yours. I'd probably choose the Gaming Plus if it's price is lower as I'd get no value or utility from any of the features MSI tacked on the Tomahawks that drive their cost up.