Your first order of business is to disconnect all drives, besides the one you intend to have the OS on, then reinstall your OS after fabricating your bootable USB installer for the OS.
Actually, while this is a good recommendation, it really shouldn't have anything to do with what boot options are available in the BIOS. If Windows is installed, then there should be options for, at minimum, Windows boot loader, and often, Windows boot loader AND/OR the drive letter of the drive with Windows installed on it, depending on the Windows version and the type of installation that was done.
First thing I would do is make sure you have the latest BIOS version installed according to what is shown on the product page for your motherboard. And, it IS a very good idea that you back up anything important from Windows that you don't already have backed up elsewhere, disconnect ALL drives except the drive you are installing Windows FROM and the drive you are installing Windows TO, and do a clean install. What version of Windows are you running?