The three SYS_FAN headers on your mobo are of the "universal" type and actually operate in Voltage Control Mode. Look in your mobo manual on p. 14 where the fan header pins are labelled. The one for CPU_FAN has a fixed +12 VDC on Pin #2, and a Speed Control signal on Pin #4. This header is operating in true PWM Mode. Now compare to the labels for the 3 SYS_FAN headers. Their Pin #2 is "Speed Control" because its voltage is varied to adjust fan speed, while Pin #4 is "VCC", indicating that it is NOT the PWM signal.
You do NOT need a third-party Fan controller, and one of those would NOT give you automatic control of fan speeds based on component temperatures. Your mobo can do the job already, and better. The mobo headers can power and control the speed of both 3-pin and 4-pin fans. The only problem in using them is that they cannot be used with a fan HUB which requires a PWM signal to operate. However, they certainly CAN be used with fan SPLITTERS (the devices that do NOT have any connection directly to the PSU). When using splitters to connect more than one fan to a single header, the limit is that the header can supply up to 1 amp in total. Most common case ventilation fans consume less than 0.2 amps each. The Noctua NF-A14 PWM (4-pin) fan consumes 0.13 amps max, whereas the 3-pin version NF-A14 FLX consumes 0.08 amp max. You can probably find similar specs for the other fans you already have. But the bottom line is you could easily connect three or four such fans to any one of your three SYS_FAN headers with no risk of overloading them. Plus, of course, that would give you automatic mobo control over them all.
In doing this you would NOT use any of those Low Noise Adapters inserted into the fan connections. You should realize a factor in using a Hub or Splitter. The mobo header you plug into can only deal with the speed pulse signal from ONE fan. So a splitter that connects several fans to a header will only connect to it the fan speed signal from ONE fan. If you examine a splitter's male output connector, you will find that all but one of them is missing its Pin #3, so those fan's speed signals are ignored completely.
When you connect fans to headers and want automatic control used, see your mobo manual p. 28 for the options in BIOS Setup. Each SYS_FAN should be set to "Normal" so that the automatic control system can do its job.
These days it's hard to find a 3-pin splitter, but any 4-pin splitter will do the job just as well. Any 3-pin fan merely does not use Pin #4, which in this case does not matter at all. There are lots of splitters around with 2 output arms of various lengths. Here's one with three output arms
http://www.newegg.com/Product/Product.aspx?Item=N82E16812423162&cm_re=Coboc_fan_splitter-_-12-423-162-_-Product
Note this is a SPLITTER with one female connector (plugs into a mobo SYS_FAN header), three male output connectors (two missing their Pin #3), and NO arm to connect to a PSU output.
Regarding how to observe the fans speeds etc, I often see people having difficulty with third-party software tools. It appears many of them require some "tweaking" to work properly with so many different mobos. But all mobos also come with a CD of utilities etc, and one of these will be a utility you can install and run under Windows that gives you a view of lots of things like fan speeds and component temperatures, and even lets you make custom adjustments if you feel the need. To me the BIG advantage of these is that they are provided by the MAKER of your mobo who knows exactly how to read its signals and display them correctly. Look at the contents of your mobo's CD for such a utility. In many cases it is listed as one of the "drivers" you can install in Windows, even though it really is not a device driver at all - it is a software utility. Of course, you can always stop what you're doing and reboot directly into BIOS Setup to get a snapshot of some of these things, but that's not as handy as having a utility display the info on your screen while you're running normal tasks under Windows.