The design of 4-pin fans includes a backwards compatibility feature in case they are connected to an older 3-pin fan header. Such a header does not provide any PWM signal - it does not even have a Pin #4. But it does it job solely by altering the DC voltage supplied on Pin #2. If a PWM fan is connected to such a header, it WILL run with speed controlled, because it gets NO PWM signal to modify the power supplied, and so its motor just runs according to the voltage available. HOWEVER, many people suggest this is NOT the ideal way to power such a fan. Moreover, if your plan is to supply reduced voltage to reduce speed and NOT to provide a PWM control signal, then it is surely wiser (and slightly cheaper) to use older 3-pin fans.
If you are set on using some means of voltage reduction for fan speed control, you will need to experiment to customize, AND you will not be able to change components easily thereafter. Why? You plan, for example, to simply use a muti-position switch to insert one of several resistors into the power supplied from the 12 VDC battery source. For any chosen speed, the value of that resistor will depend entirely on what is the CURRENT flowing through the total load, since the voltage drop across the resistor depends on the current. (And, of course, the current depends on the voltage drop across the motors, etc.) You plan to have two fans in parallel drawing current from this source. If ONE of the fans is removed or fails, then suddenly the current is altered and the voltage drop across the resistor is reduced, making the voltage supplied to the remaining functioning fan higher. Or, if you replace one fan with a different model with different electrical characteristics, that also changes the resistor value needed.
Some above have suggested a potentiometer, rather than switched fixed resistors. Technically, although it is the same component, that device will be used as a series variable resistor, and not as a potentiometer, but that's a minor point. Such a system would make it easier to adjust for changes in the fan load, because you would simply re-adjust the control knob to get what you think looks right.
You should be aware of what mobos do for the issue of starting and stalling a fan. This goes back to the fact that, to START a stopped fan, you need a certain minimum voltage or it just won't start. AFTER it is running, you can reduce the voltage a certain amount until it stalls. But once it has stalled, it will never re-start (and may overheat with a low voltage constantly supplied) unless you raise the voltage to the minimum starting value. So you can NOT set a low voltage (for minimum speed) with a resistor, then shut down, and then turn on the power again. It will NOT re-start! A mobo will always start its fans at full 12 VDC, wait a couple seconds, then reduce the voltage to what is needed for the desired speed. In normal operation it will never reduce the voltage below some minimum value (typically around 5 VDC) to avoid causing the fan to stall. It also monitors the fan speed signal from Pin #3 (which your simple proposed system cannot do) and, if that signal indicates no speed, will automatically raise the voltage to full 12 VDC for a short time to re-start the fan, then reduce it to the desired setting once again.
By the way, there is an aging and wear effect to consider. As a fan wears its bearings in normal use, the bearing friction slowly increases and the fan runs slightly slower. More important;ly, the minimum starting voltage must be increased to offset this effect.
You have not told us WHY you want to run slow fan speed in your project, and that might help to clarify advice. Are you concerned about air flow rate, or fan noise, or mechanical vibration, or what???