If you fried a motherboard part, two options, replace motherboard or the part, or live with system charging to 99%. It's new, you did not contact support for the fan issue? Which is probably normal for a gaming system that is thinner. Some of the fan noise issues with laptops are often known issues and they are partially fixed with a newer BIOS and some other updates to the thermal sensor. I have a lot of systems at work with loud fan issues, BIOS update helps a bit, although they still rev up a lot.
Also sounded like you were working on the laptop with the battery or wall power attached without draining full power from the motherboard, another really bad thing to do.