I had the same problem:
Real Tek Audio Drivers which come with a Gigabit MOBO
Installed brand new EVGA GTX 960 2gb with latest drivers
This thread gave me the hint about Nvidia taking the HDMI card sound as the MAIN. The problem was that at the regular control panel there is no way for me to revert again over other sound inputs (front audio jack, etc.).
So I went to the Real Tek "Admnistration Tool" which cames by default with this MOBO (see image here:
http://imgur.com/a/3s1Z5 ) and I saw there is a function that reads: "Advanced Device Configuration", when you click it it has 4 options, the one you want is the one which reads (excuse my poor translation): "Make the front and back output devices reproduce two different audio sequences at the same time".
So that made the sound come back 100% for me. n
My sound devices look like this:
http://imgur.com/a/AkKHg (I have DFX software for improving some aspects of the sound quality to your taste, that's why it is also ticked as green). Before making this change the legend of the Real Tek output was not "2nd output" but now seems that Nvidia has relegated it to a 2nd place lol!
Hope someone find this helpful because I'm to grateful to this forum because it has helped me with really tough decisions and serious issues.