It will work (most of the time) but not w/ PWM control of the CPU cooler. It should work just like a 3 pin fan tho however, the reason you have separate chassis and CPU fan channels is you don't want the CPU fan and Chassis fans on the same channel and therefore all running at the same speed. Even the cheap Intel stock cooler uses PWM for precise and responsive fan control, I'd not recommend giving up that feature is ya don't have to. Your CPU is subject to widely varying loads and therefore PWM is better suited to this application whereas chassis fans actually benefit from less responsiveness as you don't want them spinning up and down in rapid cycles.
There is a lot of misinformation out there on the Phanteks hub as it is unique in the industry. It can take a PWM ***or *** DCV signal and control 3 pin fans. FAN1 is not a 4 pin header and is therefore useless for PWM control... and even if it did, the hub DOES NOT output a PWM signal; it outputs a DC voltage signal..... at 3.3 volts or so ya phanteks fans will spin at about 325 rpm..... at 12 volts they spin at full speed. You can measure this very simply with a volt meter .... PWM is pulsed 12 volt ..... DCV is 3.3 - 12 volts. I just measured the FAN1 header at 3.58 volts on my system at 399 rpm, .... clearly it therefore is NOT a PWM output.
1. When the Enthoo Pro was released it was the era of Z87. With Z87 every board out there had PWM on the CPU and CPU_1 and DCV control on the 3 or 4 pin* chassis headers. So the manual was correct at that time, that the Hub would only work with PWM control using CPU or CPU_1
* Many peeps mistook the Z87 4 pin CHA headres for PWM, it is not ..... some (i.e. Asus) even said PWM in the owners manual but later confirmed that the Z87 chassis headers were DCV. While the industry transitioned from DCV to selectable DCV / PWM for chassis headers, we got the headers with Z87 and the functionality with Z97
However, that is no longer true with Z97 as most Z97 boards have switchable chassis fan headers that will run either DCV or PWM. Therefore, if you have a Z97 board you can likely use any CPU or CHA header.... of course consult the manual for your particular board.
2. You can NOT however plug a PWM CPU fan into the header and expect PWM speed control. The Phanteks Hub is designed to use PWM input to control 3 pin fans. Looking at the image below this should be perfectly clear as the connector only has 3 pins. Without that 4th pin, PWM doesn't work.
http://pinoutsguide.com/Motherboard/mb_pwm_fan_pinout.shtml
1 GND Ground
2 +12V Fan Power
3 SIGNAL Fan RPM
4 PWM Digital Control
Without the 4th pin, no PWM signal is received by the fan and it runs at full speed.....that doesn't (necessarily) negate DCV control.
3. One thing the Phanteks manual doesn't cover is the fact that this hub does not in fact **need** to be connected to a PWM header.
a) Connecting the input to the hub to any of the following will provide PWM control via DCV:
Z87 CPU or CPU_1 PWM Headers
Z97 CPU or CPU_1 or CHA PWM / DCV 4 pin Headers set in the BIOS to PWM (many auto detect)
Any other "real" PWM headers (Z87 CHA headers have 4 pins but are NOT PWM)
If you have a fan load < 1 amp (say 6 fans at 0.14 amps), you do not need to connect the 12v SATA Power Connector. You certainly can if you want to but it's more cable clutter. Anything of 0.85 or so amps and I would connect it. You will maintain full and functional speed control via PWM.
b) Connecting the input to the hub to any of the following will provide DCV control of 3-pin (and only 3 pin) fans:
Z87 3 or 4 pin DCV headers (CHA) Headers
Z97 CHA PWM / DCV 4 pin Headers set in the BIOS to DCV
Any other DCV headers with speed control capability
If your header is DCV, it provides variable voltage signal to control fan speeds. So, and obviously if you think about it, if you connect the 12v SATA Power Connector, the 12volt signal from the PSU will override the vbaruable voltage coming from the header and you lose speed control. So make sure that you full load current draw if using DCV remains below 0.85 or so amps.,DO NOT connect the power cable. You will maintain full and functional speed control via PWM.
Simply Put:
PWM CPU Header to your CPU cooler's PWM Fan
PWM CPU_1 Header to your Hub to control up to (11) 3 pin DCV Fan via the PWM signal from your MoBo
PWM CHA Header to your Hub to control up to (11) 3 pin DCV Fan via the PWM signal from your Z97 MoBo (or other confirmed PWM header
or
PWM CPU Header to your CPU cooler's PWM Fan
PWM CPU_1 Header to your Hub to control up to (11) Fans via the PWM signal from your MoBo
DCV CHA Header to your Hub to control up to (6 or so - max 1 amp total) Fans via the DCV signal from your Z97 MoBo (or other confirmed PWM header