Every type of tubing has a few things they don't like to be in contact with and this is worse with clear ones. Plastics in general don't like hydrocarbons unless they have additives to protect them against the types of hydrocarbons they are intended for and clear plastics cannot contain such protection additives that would make them cloudy or opaque.
Ideally, you'd get tubing made of the same plastic already used in the loop to reduce the number of different plastics you need to worry about.
You may want to inspect your CPU's water block to make sure that material didn't leech from your tubes and gunked the fins. Some "milky" fluids also have issues with clotting which eventually ends up clogging the heat block, radiators, pumps, etc.