yeah, that does seem slow. I just got 40k with a 2700+, a7n8x, 512 pc2700, and a Radeon 9800 pro with cat 3.7 at stock speeds. My specs are a little higher, though I would guess that's not the difference between our scores.
What brand of RAM are you using? How many windows services do you have running in the background? Latest BIOS? Etc.
Post your compare link too, it may be useful.
<A HREF="http://arc.aquamark3.com/arc/arc_view.php?runID=506552170" target="_new">http://arc.aquamark3.com/arc/arc_view.php?runID=506552170</A>
XP1700 TBred-B @ 2.16G (166*13)
ASUS A7N8X Deluxe
2x256MB OCZ EL PC3500 DDR
Radeon 9800 Pro
45G IBM 7200
3DMark 2001SE: <A HREF="http://service.futuremark.com/compare?2k1=6524184" target="_new">http://service.futuremark.com/compare?2k1=6524184</A>