That website is so bad. Seriously... tried to get the manual for the motherboard, I couldn't. I'm on my phone right now and that website is unusable for mobile. MSI needs to really work on that... just horrible UI.
Getting that out of the way, look on your motherboard for the headers with SYS_FAN printed near them... on their specifications they claim having 6 case fan headers... so it should be enough:
INTERNAL CONNECTORS
- 1x 24-pin ATX main power connector
- 1x 8-pin ATX 12V power connector
- 6x SATA 6Gb/s connectors
- 2x M.2 slots (M-Key)
- 1x USB 3.2 Gen 1 5Gbps Type-C port
- 1x USB 3.2 Gen 1 5Gbps connector (supports additional 2 USB 3.2 Gen 1 5Gbps ports)
- 2x USB 2.0 connectors (supports additional 4 USB 2.0 ports)
- 1x 4-pin CPU fan connector
- 1x 4-pin water-pump fan connector
- 6x 4-pin system fan connectors
- 1x Front panel audio connector
- 2x System panel connectors
- 1x Chassis Intrusion connector
- 1x 4-pin RGB LED connector
- 2x 3-pin RAINBOW LED connectors
- 1xTPM module connector
- 1x Clear CMOS jumper
https://www.msi.com/Motherboard/B550-A-PRO/Specification