Should I plug my fans into my case or motherboard?

[Rulee09]

I am building a PC and I was wondering if I should plug my fans into the motherboard or into the case? The case has a fan controller and a fan hub on it so I'm not sure.

 

[Gam3r01]

The motherboard will automatically select fan speeds based on ambient temperature. The fan controller allows you to do it manually.
If you have PWM fans that can have variable speeds I would do fan controller, it will give you the largest control.