I'm surprised that Karadjgne says the case's fan hub CAN "translate" from PWM to Voltage Control Mode. That is not a common feature is basic fan hubs, but it certainly can be done. Moreover, your last post, OP, says it appears to work that way when connected to your CPU_FAN header.
Almost all mobo fan headers now use a 4-pin configuration. Ideally, and in most modern boards, that means the same header CAN be configured to deliver EITHER 3-pin Voltage Control Mode signals, or 4-pin PWM Mode signals, so the board can be used with either type of fan. However, in earlier days as PWM fan systems were introduced, various board makers implemented the 4-pin header systems in several ways:
(a) 3-pin Voltage Control Mode only;
(b) 4-pin PWM Mode only;
(c) both modes available, with choices made manually in BIOS Setup;
(d) both modes available, plus an "Auto" option that was supposed to test the fan connected at each start-up and adjust the header to what was present.
I note also that several used Option (b) above for the CPU_FAN header only, and Option (a) for all CHA_FAN headers.
Now, 4-pin fans are designed with backwards compatibility features. One of them is that it WILL operate properly under the older Voltage Control Mode, even though that is not ideal. Consider what happens when that fan is connected to a real 3-pin header, OR to a 4-pin header using the older Mode. It receives NO PWM signal from Pin #4, so the fan's internal chip cannot modify the power flow from the power supply line (Pin #2) through the windings; the power available is just passed on unchanged. But that source is a VARYING voltage (as a 3-pin fan would require), not a fixed 12 VDC, so the fan speed IS controlled. So NOTE an easy "Fake Auto" method: use option (a) above and the header does ONLY 3-pin Mode. This DOES control the speed of either fan type connected there. The only way you find out the trick is when you try to use a fan Hub that requires a PWM signal from Pin #4, and it does NOT work because there is no signal there! OP, since your mobo manual does NOT say anything about options for the header MODE, it is entirely possible that they used Option (a) above, or the two-option version I noted below that list.
The two-option combo appears to be what yours does: a PWM signal seems present from the CPU_FAN header, but absent from the CHA_FAN headers. However, that is NOT what the labels in your manual say about those headers. The only real way to check what they are doing is to use two fans - one 3-pin, one 4-pin - and test each header. Plug one fan into the header, and use settings in that header's configuration in BIOS Setup to tell it to change speeds. A header using the older 3-pin Voltage control Mode CAN change the speed of either fan type. A header using the new PWM Mode can change the speed of only a 4-pin fan, and will cause a 3-pin fan to run full speed no matter how it is set. If you really need to know whether a header with 4 pins may NOT be sending out a PWM signal, then you need to do a test with a fan Hub of known design (i.e., one that can only send out the PWM signal from a header, and supplies the +12 VDC power solely from its PSU connection with NO DC power drawn from the mobo header) in combination with those two test fans. In that connection system, the fans will always receive the full +12 VDC supply on Pin #2 from the Hub, and can only receive a PWM signal for speed control IF the mobo header supplies it. So a 3-pin fan in this scheme will always run full speed, and a 4-pin fan will change its speed ONLY if the mobo header is supplying the PWM signal (and hence IS using the new PWM Mode).