No there were no loose screws (except for mine). I counted them in and out (like a surgical nurse). The stand-offs are part of the case, so maybe the combination of a large-headed screw, the motherboard and the stand-off resulted in a short.
I'm not out of the woods yet. I have to see if it will POST. All I have is fans and lights at the moment.
My other power supply also worked, so I have that tested too now.
I have put forward a proposal to do a Minecraft Machine course, using a mATX board, like the first suggestion.
Students will have to buy the bits from me/school (at cost or a little less) or bring their own bits from a specified list. (i3, i5, i5, mATX motherboard H97, HDD, 2 x 4Gb memory, case, GOOD PSU) There will be a material fee of about $400 - $450 (whatever the standard parts cost). And students will need their own monitor, keyboard/mouse and OS. (Or they can buy them, or I will obtain them on their behalf.)
The PSU will not handle overclocking of either CPU or GPU, but will go up to GTX980. Radeon GPUs will need to be more limited due to their higher TDP. mATX is inexpensive and will allow SLI (I think).
Any ideas or suggestions accepted.