You might want to add one more thing to check for: cables running under your mobo that have been "pierced."
I wanted clean cable routing for my recent build, and I've seen people run cables under the motherboard. I'm not sure if they're running them beneath the motherboard or beneath the motherboard tray, but my Antec P180 allowed for very little to run under the tray. As such, I ran a few cables directly under the motherboard, in the area allowed by the standoffs. Bad move! The sharp solder managed to pierce one of the cables, and apparently the bare wire was enough to short the sucker. Rerouted and everything is fine - fortunately I didn't damage anything.