The different kinds of cable are:
UTP - Unshielded Twisted Pair
FTP - Foiled Twisted Pair
STP - Shielded Twisted Pair
I suppose there could be an SFTP (shielded foiled twisted pair) but I can't say that I've heard of it. All of those are just different levels of shielding. For 40 meter gigabit runs the most inexpensive approach would be Cat6 UTP. Going to FTP or STP cable can be very costly but if you have the bucks go for it though
If there are high interference emitting devices around (large electric motors or power systems) you may need to get FTP or STP to combat it. Either one should be fine so go with the one they will charge less for
One more word to add to the mix here is Plenum. If any of the wires are going to be following heating ducts or other things that might get warm you will need to get Plenum rated cable. Unfortunatly that stuff is very expensive, but to fit safty regulations you will probably need it. It is cable that wont emit any harmful fumes when heated and is more resistant to burning.