My first thought is: how do you know the fan speed? If you are using some third-party utility, it MAY not be telling you the correct value. Some of those software tools require custom calibration or simply never tell the truth, and some are just fine. The only tool I consider reliable is what comes with the mobo, and there are two ways for that. First, you always can see the fan speeds in the BIOS Setup screens for the separate fan headers. However, those can only be seen when you are not using the machine for real work, and only at low workload (observing BIOS Setup screens). In addition to that, almost all mobos come with a CD full of drivers and utility tools, and one of those latter is a Windows app you can install and run under Windows to view and adjust all your fans (and some other items). So you can have this running on your screen at the same time as you do real work, and observe fan operations that way. This tool supplied with your mobo will tell you the truth. Just be sure you know which fan is plugged into which mobo header.
If this confirms that one or more of your fans is always running slow even though it is set to run fast or even full speed, and is making noise while doing that, then you have a worn out fan with bad bearings. It needs to be replaced.
By using these reliable speed measures, if you find that the noisy fan (or maybe both the blue fans) really is running full speed all the time as I suspect, then we are back to needing to connect those fans differently. As I said, since the two blue fans and the rear exhaust fan with no lights are all 3-pin models, the ONLY mobo header able to control their speeds is the 3-pin CPU_FAN2 header already in use for the rear fan. There IS a way to connect all three of these to that one header. It is called a Splitter, and all it does is connect all three fans in parallel to the power lines from the mobo host header. That way they all three get the same speed control information and all do the same thing. Here is one example of a Splitter with three outputs
https://www.newegg.com/p/N82E16812423163?Description=coboc fan splitter&cm_re=coboc_fan_splitter--12-423-163--Product
However, it is currently out of stock. An alternative is this small 5-output circuit board that you must fasten down safely so it does not move and make contact to Ground by mistake
https://www.newegg.com/p/N82E16812423163?Description=coboc fan splitter&cm_re=coboc_fan_splitter--12-423-163--Product
Both of these are designed with 4-pin connectors, but they will fit and work with the 3-pin header and fan connectors you have, just not using the fourth pin.
A few notes about using these. First, identifying them. A SPLITTER like these has only two types of "arms" or connectors. ONE arm has a female (with 4 holes) fan connector that plugs into the mobo header. Two arms (or five ports) have 4-pin male connectors to plug in your fans. A quite different type of device I prefer to call a HUB (but also sold under the name "Splitter") has an additional third "arm" that must be plugged into a SATA or 4-pin Molex power output from the PSU. The Hub can ONLY be used with 4-pin fan systems, so do NOT get one of those.
Any mobo fan header can deal with the speed signal fed back to it from only ONE fan. So any Splitter (or Hub) will feed back only one fan's speed signal on Pin #3, and ignore all the other fans' speed signals. For the three-output Splitter with arms above, this is done by simply omitting the Pin #3 on two of its three output connectors. For the circuit board, you can't see this detail, but ONLY the one port labelled "CPU" will send its fan's speed signal to the mobo header. So you must connect one of your three case fans (NOT your CPU cooler fan) to this header of the Splitter. The speeds of the other two fans will never be reported to the mobo and you will never "see" them.
When using a Splitter, all power for all its fans comes from the single mobo header. Such a header has a limit - it can supply up to 1.0 A max current. Most fans use 0.10 to 0.25 A each. But those two LED fans (with blue lights in them) use typically 0.30 to 0.40 A each. So you CAN connect two LED fans and one plain fan together using a Splitter to a single mobo CHA_FAN (or, in this case, the CPU_FAN2) header safely. Then all three fans' speeds will be controlled by that one header.